NMReDATA Initiative

Main information website of the NMReDATA Initiative

Pop-up models

A user action will open a popup window with a model.

### jmolFile tag The link Chair.cml will open a popup window displaying Chair.cm taken from this wiki `<jmolFile text='cyclohexane'>Chair.cml</jmolFile>` ### jmolMol tag The link caffeine will open a popup window displaying caffeine `<jmolMol text='something in your coffee'>caffeine</jmolMol>` and acetic acid
### jmolSmiles tag The link c1ccccc1\[N+\](=O)\[O-\] will open a popup window displaying nitrobenzene `<jmolSmiles text='nitrobenzene'>c1ccccc1[N+](=O)[O-]</jmolSmiles>` ### jmolPdb tag The link 1ab0 will open a popup window displaying 1ab0.pdb `<jmolPdb text='adipocyte lipid binding protein'>1ab0</jmolPdb>`
### jmolAppletButton tag ` ` `   `` `[`https://files.rcsb.org/download/1ab0.pdb.gz`](https://files.rcsb.org/download/1ab0.pdb.gz)` ` `   ` 1AB0.pdb Murine adipocyte lipid binding protein at pH 4.5 `   `` Adipocyte lipid binding protein` ` ` ### jmolAppletLink tag ` ` `   `` `[`https://files.rcsb.org/download/1ab0.pdb.gz`](https://files.rcsb.org/download/1ab0.pdb.gz)` ` `   ` 1AB0.pdb Murine adipocyte lipid binding protein at pH 4.5 `   `` Adipocyte lipid binding protein ` ` `

Pop-in models

User action will insert a model within the page.

Using urlContents

  `   `` `[`https://files.rcsb.org/download/1ab0.pdb.gz`](https://files.rcsb.org/download/1ab0.pdb.gz)` ` `   `

1AB0.pdb Murine adipocyte lipid binding protein at pH 4.5

   ` Adipocyte lipid binding protein `    `250`    `linen`  </jmolAppletInlineLink>

</jmol>

In-page models

A model is inserted as part of the page at page load time.

jmolApplet tag

`   ``greenTint`` ` `   ``260`` ` `   `` Chair.cml ` `   ``spin popup`` ` ` ` `   ``blueTint`` ` `   ``300`` ` `   `` `[`https://files.rcsb.org/download/1ab0.pdb.gz`](https://files.rcsb.org/download/1ab0.pdb.gz)` ` `   ``2`` ` `   ``spin popup`` ` ` ` `   `` ` C3H8O APtclcactv02181912073D 0 0.00000 0.00000 `12 11  0  0  0  0  0  0  0  0999 V2000` `   0.5267   -0.4947   -0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0` `  -0.5950    0.5458   -0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0` `  -1.9499   -0.1649    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0` `   1.7922    0.1691    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0` `   0.4436   -1.1185    0.8900 H   0  0  0  0  0  0  0  0  0  0  0  0` `   0.4436   -1.1185   -0.8900 H   0  0  0  0  0  0  0  0  0  0  0  0` `  -0.5119    1.1696    0.8900 H   0  0  0  0  0  0  0  0  0  0  0  0` `  -0.5119    1.1696   -0.8900 H   0  0  0  0  0  0  0  0  0  0  0  0` `  -2.0330   -0.7887   -0.8900 H   0  0  0  0  0  0  0  0  0  0  0  0` `  -2.0330   -0.7887    0.8900 H   0  0  0  0  0  0  0  0  0  0  0  0` `  -2.7490    0.5764    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0` `   2.5508   -0.4305   -0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0` ` 1  2  1  0  0  0  0` ` 2  3  1  0  0  0  0` ` 1  4  1  0  0  0  0` ` 1  5  1  0  0  0  0` ` 1  6  1  0  0  0  0` ` 2  7  1  0  0  0  0` ` 2  8  1  0  0  0  0` ` 3  9  1  0  0  0  0` ` 3 10  1  0  0  0  0` ` 3 11  1  0  0  0  0` ` 4 12  1  0  0  0  0` M END `   ` ` ` ` ` `   ` `   `` spacefill ` `   `` C ` ` ` ` ` `   ` `   `` ball and stick ` `   `` C ` ` ` ` ` `   `` spin on ` `   `` spin off ` `   `` false `` ` `   `` spin ` `   `` C ` ` ` ` ` `   `` C ` `   ` `     `` color CPK ` `     `` true ` `     ` `   ` `   ` `     `` blue ` `     ` `   ` `   ` `     `` green ` `     ` `   ` ` ` ` ` `   `` C ` `   ``false` `   ` `     `` color CPK ` `     `` true ` `     ` `   ` `   ` `     `` blue ` `     ` `   ` `   ` `     `` green ` `     ` `   ` ` ` `   `` Models/2-propanol ` ` `
#### Using uploadedFileContents ` ` `   ``B`` ` `   ` A model stored in a file in this wiki
Chair conformation of cyclohexane
#### Using urlContents ` ` `   ``BB`` ` `   ` A file retrieved from the PDB
Murine adipocyte lipid binding protein at pH 4.5 (1AB0.pdb)
#### Using inlineContents ` ` `   ``C`` ` `   ``lightGray`` ` `   ``240`` ` `   `
This is 1-propanol
#### Using wikiPageContents ` ` `   ``D`` ` `   ` Data read from the page Models/2-propanol `   ``yellowtint`` ` `   ``260`` ` `   `
This is 2-propanol
#### Using script ` ` `   ``A`` ` `   ` This box might hold a 3D model `   ``blueTint`` ` `   ``150`` ` `   ` ` ` `` `` `  ` `    A ` `    This box might hold a 3D model ` `    blueTint ` `    150 ` `    ` `  ` ``

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